General

Profile

Ryan Hoffman

  • Login: RMHOFFMAN
  • Email: rmhoff@scripps.edu
  • Institution: TSRI
  • Software Key Date: 12/15/2014
  • Registered on: 04/30/2012
  • Last connection: 11/05/2014

Issues

open closed Total
Assigned issues 1 6 7
Reported issues 2 9 11

Projects

Project Roles Registered on
Appion Reporter 04/30/2012
Leginon Reporter 04/30/2012

Activity

11/06/2014

01:43 PM Appion Bug #2873 (Closed): Xmipp2 CL2D class averages summary page does not always correctly map the class averages to the underlying stack of raw particles
Gabe and I have independently confirmed that the bug is resolved. Thanks very much. Ryan Hoffman

07/31/2014

01:07 PM Appion Bug #2873: Xmipp2 CL2D class averages summary page does not always correctly map the class averages to the underlying stack of raw particles
Do the .job files get generated if the command was run from a manually-submitted batch script?
I've attached the P...
Ryan Hoffman

07/30/2014

03:41 PM Appion Bug #2873 (Closed): Xmipp2 CL2D class averages summary page does not always correctly map the class averages to the underlying stack of raw particles
This is a somewhat odd bug that was noticed by Gabe Ozorowski. It can be most-easily demonstrated with the following ... Ryan Hoffman

07/29/2014

01:10 PM Appion Bug #2870: longboard/gammamyami viewer cannot view StorNext paths (or resolve symbolic links to those paths)
Here's a link to the 'info' for the test image, after it was broken (Sargis wanted this info associated with the issu... Ryan Hoffman
01:08 PM Appion Bug #2870 (Closed): longboard/gammamyami viewer cannot view StorNext paths (or resolve symbolic links to those paths)
To mitigate a short-term storage crunch, I attempted to a) move data from the /gpfs/group/em/ path on Garibaldi to th... Ryan Hoffman

05/12/2014

07:35 AM Appion Feature #2766 (In Code Review): import script to repair FEIs MRC format
Ryan Hoffman
07:34 AM Appion Feature #2766 (Won't Fix or Won't Do ): import script to repair FEIs MRC format
FEI has apparently broken the MRC format by adding a way-too-large header with some unconventional metadata. Anchi fo... Ryan Hoffman

10/18/2013

09:25 AM Appion Bug #2562 (Closed): default values for low-pass filtering in DoG picker don't make sense
The default values for low-pass filtering (which are cues to the user as to appropriate values) are positive numbers.... Ryan Hoffman

10/11/2013

12:33 PM Appion Bug #2555 (Closed): Database issues (user-specific)
Helen can run a job at the Garibaldi CLI with no problems. The results immediately display on Appion. So I think this... Ryan Hoffman
09:01 AM Appion Bug #2555: Database issues (user-specific)
Not sure if this is related...seems that data collection is now broken:... Ryan Hoffman

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