Project

General

Profile

Roadmap

Appion/Leginon 3.6

open

Appion/Leginon 3.7

open

7%

53 issues   (4 closed49 open)

Appion/Leginon 4.0

open

This will use python 3

4%

21 issues   (1 closed20 open)

Appion - Appion/Leginon Future Version

open

Future unnamed version of Appion and Leginon

39%

258 issues   (98 closed160 open)

Version future

This is the destination for Feature to implement or Bugs to fix that have no specific timeline

  1. Automated testing #1005 (Amber) (2 weeks)
    1. Develop test scripts where possible #1007
    2. Establish a permanent test data set in Data00
       
  2. Expand Auto-Installer #1015 (Amber)
    1. add processing packages to installer (spider, frealign, eman)
       
  3. Add modules to pipeline
    1. Add Protomo2 (Amber, Eric) #1026
    2. Add new version of Chimera to existing code to learn what is involved #82 #25
    3. Chose other modules to add after code changes
    4. See if StokesLabProcedure will integrate their stuff as a Beta test
       
  4. Create a developers tutorial #1022
    1. Add a developers tab to the appion website with links to all the resources available #1021
    2. Define coding standards (#10)
      1. python doc string viewer/editor (#162)
      2. Edit several key files (such as often copied ones) to use standards rigorously as samples #1012
      3. PHP standards doc #1013
      4. python standards doc #231
         
  5. Features for public cluster (release with 2.1.1)
    1. Users need to be able to run imageuploader remotely. (#274)
    2. Need to be able to define max number of procs per node for each processing host - Advanced version (#366)
    3. Add single user sign-on functionality for SDSC roll-out (#1010)
    4. Investigate how data will move between AMI and SDSC (#1011)
    5. Having a different password for the imageviewer login and the cluster login is confusing. #364
       

Moved to low priority:

  1. Expand Auto-Installer #1015
    1. multiple servers #1016
    2. multiple platforms #1017 - Mac (highest priority), Fedora, Suse, Ubuntu
    3. more options (Advanced vs Novice user) #1018
    4. yum, rpm ? #1019
       
  2. Automated testing #1005 (Amber) (4 weeks)
    1. Develop unit tests where applicable #1006
    2. Look into automated GUI test apps #1008
    3. Static testing for code standards? #1009
       
  3. Better error reporting
    1. Biggest problem is jobs management which could be helped with an agent
    2. Show jobs that are errors (#603)
    3. Create an error log (#75)
    4. Remote cluster recons should not return as done if job failed (#531)
       
  4. Improve help tools
    1. Add links to redmine wiki help pages to appion pages (#666)
    2. Add pop up dialogs to report pages as well (#516)
    3. Image viewer tool tips
       
  5. Create or use an object-relational mapping for PHP #1020
    1. Look into Zend library
      1. example
         
  6. Discuss a strategy to modify database schema without effect external developers.
    1. we will wait and address this when someone is ready to make a change.
       
  7. clean up web interface
    1. Remove inconsistencies in web interface (#41 #670)
    2. Add session name to window so that window are not reloaded from another session (#512)
    3. Remove select project box in getproject page. (#14)
    4. Implement sorting algorithm into project management tool. (#13)
    5. Job Status updates missing on some tools (#994)
    6. Reorganize the last column in the view project page. (#15)
       
  8. Leginon
    1. Feature to measure focus change in a random direction. (#226)
    2. import preset by searching for session that uses an application (#654)
    3. Allow averaging of multiple focus measurements (#225)
    4. Leginon image viewer should cache the FFT images as well. (#217)
    5. target queue editor (#214)
       
  9. misc
    1. Data Location tool-find data and push it to external drive (#954)
    2. Snapshots of projection views for uploaded models. (#857)
    3. Put variables from config.php into the database (#699)